| === Fluffer is now known as log | ||
| === log is now known as k | ||
| === k is now known as Logan_ | ||
| TheLordOfTime | are Precise's repos still frozen? | 02:28 |
|---|---|---|
| === almaisan-away is now known as al-maisan | ||
| === al-maisan is now known as almaisan-away | ||
| dholbach | good morning | 06:55 |
| TheDrums | micahg: You happen to be about? | 06:56 |
| === almaisan-away is now known as al-maisan | ||
| === imbrando1 is now known as imbrandon | ||
| gch-scilifelab | hello everybody | 09:31 |
| gch-scilifelab | I'm doing my master thesis in the scilifelab (scilifelab.se) in Stockholm, we are currently working in a nexgen-data processing pipeline and I'm packagin all its dependencies 11:24:57 AM | 09:31 |
| gch-scilifelab | i've already packaged some of them, but I'm having problems when packaging gatk 11:25:21 AM | 09:31 |
| gch-scilifelab | it looks like it's failing to download some data, and this is what I don't understand, locally, I can build the package without problems, but when submitting to launchpad I get this error 11:26:35 AM | 09:31 |
| gch-scilifelab | https://launchpadlibrarian.net/113060176/buildlog_ubuntu-precise-amd64.gatk_1.6-0ubuntu1_FAILEDTOBUILD.txt.gz 11:26:42 AM | 09:31 |
| gch-scilifelab | can anybody give me a clue of what is happening please? | 09:31 |
| tumbleweed | the buildds don't have internet access | 09:32 |
| gch-scilifelab | (sorry for the time stamps, I asked before in the wrong channel) | 09:32 |
| Zhenech | gch-scilifelab, you should not download when building | 09:32 |
| directhex | gch-scilifelab, build daemons don't have internet access | 09:32 |
| tumbleweed | everything that you need for the build should be included in the source package | 09:32 |
| tumbleweed | (or its dependencies) | 09:32 |
| gch-scilifelab | hm.. oks | 09:32 |
| directhex | gch-scilifelab, this is a design choice, otherwise it would penalise people who have no internet access but do want to develop free software | 09:32 |
| gch-scilifelab | fast answer :-) | 09:33 |
| gch-scilifelab | thank you very much | 09:33 |
| gch-scilifelab | I'll try to fix it | 09:33 |
| Zhenech | gch-scilifelab, I think you are looking for the "ivy" package into your build-depends | 09:33 |
| tumbleweed | err, it's more of a design choice for reproducability and licence compliance | 09:33 |
| directhex | that too | 09:33 |
| directhex | it's especially annoying when a build system uses a CURRENT file to download the latest version of some non-bundled component, but doesn't actually work with the latest version | 09:34 |
| directhex | or if the latest version is missing | 09:34 |
| directhex | e.g. cgit was unbuildable for a while due to kernel.org being down due to hacks | 09:34 |
| gch-scilifelab | but, they don't have an internet connection? or they cannot download stuff? | 09:37 |
| tumbleweed | what's the difference? | 09:37 |
| Zhenech | for you, they have no internet connection | 09:38 |
| gch-scilifelab | well just because I thought that the other software I packaged also checked for some dependencies | 09:38 |
| tumbleweed | they have access to a mirror. nothing else | 09:38 |
| gch-scilifelab | obciously I'm wrong if there is no internet connection for the builder machines | 09:38 |
| gch-scilifelab | ok | 09:38 |
| gch-scilifelab | thanks | 09:39 |
| gch-scilifelab | in fact, the other packages I have built doesn't require internet connection. So I'll try to solve this | 09:45 |
| gch-scilifelab | thank you for your help, very kind you all :-) | 09:45 |
| xnox | i see that lintian is in sync now, what's the best place / way to propose changes to the ubuntu profile? | 09:51 |
| xnox | via bts or lp? | 09:51 |
| tumbleweed | xnox: bts / #debian-qa | 10:24 |
| tumbleweed | assuming you don't need to discuss this with ubuntu people | 10:24 |
| xnox | tumbleweed: no need to discuss, "I am always right" (tm). | 10:25 |
| xnox | tumbleweed: it affects both debian/ubuntu so it should be ok =) | 10:25 |
| xnox | tumbleweed: filed a bug report. | 10:25 |
| ESphynx | xnox: Many thanks for the review/upload =) | 10:36 |
| xnox | ESphynx: no-problem. now you need to wait for it to go through new queue. if it gets accepted you have plenty of work to do on that package still ;-) | 10:37 |
| ESphynx | xnox: plenty of work eh? | 10:37 |
| * ESphynx is waiting :P | 10:38 | |
| ESphynx | xnox: Anything in particular that will require more work? | 10:39 |
| xnox | ESphynx: many compiler warnings to begin with. | 10:39 |
| xnox | it spits out many int != char | 10:40 |
| xnox | which will help with porting to 64bit later on upstream. | 10:40 |
| ESphynx | hmm I think those might be from the lexers & parsers generated by bison/gnu | 10:40 |
| ESphynx | which unfortunately I can’t do much about... but they’re harmless though ( don’t think they’d affect the 64 bit warnings either ) | 10:41 |
| ESphynx | other than that I know there’s the pthread_mutex_setkind_np warning... which I have yet to decide what to do with... I think now the more portable function is available on Linux, but before it was not ... | 10:42 |
| ESphynx | There’s also the warnings spit out by GCC from eC generated C code... Which you probably did not see because I hide them :P | 10:42 |
| ESphynx | that however is a big deal :P | 10:42 |
| ESphynx | bison/flex* | 10:43 |
| === al-maisan is now known as almaisan-away | ||
| ESphynx | I’m fixing warning: pthread_mutexattr_setkind_np undefined, cause it was breaking on Android anyways :P | 10:54 |
| ESphynx | xnox: Are these ( http://pastebin.ca/2197021 ) the other warnings you were referring to? | 10:55 |
| xnox | yeah. | 10:55 |
| xnox | some of. | 10:55 |
| ESphynx | I never got the last one! MAX_INCLUDE_DEPTH is defined to be 10 | 10:56 |
| ESphynx | as in #define | 10:56 |
| ESphynx | and the others are all from code generated by flex, which unfortunately I can’t fix :S | 10:56 |
| ESphynx | oh look at that. | 10:58 |
| ESphynx | all of those are warnings generated by the eC compiler :P | 10:58 |
| ESphynx | Guess I could fix/tweak the eC compiler :P | 10:58 |
| ESphynx | xnox: some of? you had a lot more? :P | 11:00 |
| xnox | ESphynx: busy... =) can't be asked to find the build log again.... | 11:01 |
| ESphynx | Those are the only ones I get apart from warning: pthread_mutexattr_setkind_np undefined; assuming extern | 11:01 |
| ESphynx | xnox: np. thanks for pointing this out, i’ll make it a point to not output these anymore. | 11:01 |
| xnox | ESphynx: rather than "not outputing them" they should be fixed. | 11:02 |
| xnox | either in code, or the parser / code-generator. | 11:02 |
| ESphynx | xnox: they’re warnings from the eC compiler | 11:02 |
| xnox | since they are real warnings. | 11:02 |
| ESphynx | xnox: and they are not valid | 11:02 |
| ESphynx | (well flex could be modified, but since GCC does not complain about them, they likely won’t fix flex) | 11:03 |
| ESphynx | and the MAX_INCLUDE_DEPTH thing is a bug in my compiler, it should realize MAX_INCLUDE_DEPTH is 10 | 11:03 |
| === almaisan-away is now known as al-maisan | ||
| === al-maisan is now known as almaisan-away | ||
| === almaisan-away is now known as al-maisan | ||
| === al-maisan is now known as almaisan-away | ||
| === almaisan-away is now known as al-maisan | ||
| === Quintasan_ is now known as Quintasan | ||
| micahg | TheDrums: very sporadically this week, how can I help you | 13:39 |
| === al-maisan is now known as almaisan-away | ||
| gch-scilifelab | hi, I have a problem when updating a re-packaged software. I packaged a software a few days ago, but I did it wrong (I didn't want to include the source code, just the resulting jar files). Today I have repackaged the software properly but when I do a "dput ppa: etc" i receive a mail rejecting the upload with the message: | 15:46 |
| gch-scilifelab | Rejected: | 15:46 |
| gch-scilifelab | File gatk_1.6.orig.tar.gz already exists in Bio-tools, but uploaded version has different contents. See more information about this error in https://help.launchpad.net/Packaging/UploadErrors. | 15:46 |
| gch-scilifelab | File gatk_1.6-0ubuntu0.diff.gz already exists in Bio-tools, but uploaded version has different contents. See more information about this error in https://help.launchpad.net/Packaging/UploadErrors. | 15:46 |
| gch-scilifelab | Files specified in DSC are broken or missing, skipping package unpack verification. | 15:46 |
| gch-scilifelab | looking into my ppa I don't see this files, but if I filter by "supress", there they are.. | 15:47 |
| gch-scilifelab | https://launchpad.net/~gch/+archive/utils/+packages?field.name_filter=&field.status_filter=superseded&field.series_filter= | 15:47 |
| gch-scilifelab | is there any way to supress them definitely? If not, what should I do? | 15:48 |
| Lasall | gch-scilifelab: increase version | 15:48 |
| gch-scilifelab | hi lasall, I've tried repackaging with the version name gatk-1.6-0ubuntu1 but doesn't works | 15:49 |
| Lasall | you have to increase version of orig tarball | 15:49 |
| gch-scilifelab | aha, ok, but if the program version is 1.6... I cannot put another version | 15:50 |
| gch-scilifelab | maybe 1.6.0? | 15:50 |
| gch-scilifelab | do you mean? | 15:50 |
| Lasall | if it were an official package, this would introduce an epoch imho | 15:52 |
| Lasall | but for a ppa i would use 1.6.0 | 15:52 |
| tumbleweed | 1.6+source ? | 15:52 |
| Laney | call it 1.6.0+repack-0ubuntu1 or something | 15:52 |
| Lasall | ok | 15:52 |
| Laney | it's a good lesson about messing with orig tarballs | 15:52 |
| gch-scilifelab | ok then, I'll rename it | 15:53 |
| gch-scilifelab | thanks | 15:53 |
| gch-scilifelab | and do you know for how long the orig tarball will be there with the "supressed" or "deleted" state? | 15:53 |
| tumbleweed | forever | 15:54 |
| Laney | once a file is there it is there | 15:54 |
| Laney | and anyway, you'll have to go forward in version number | 15:54 |
| gch-scilifelab | I mean, they are occupying disk space, don't would it be worth to delete them if the developer wants to? | 15:55 |
| gch-scilifelab | aha | 15:55 |
| tumbleweed | it's not a matter of the file taking disk space, but of ensuring that you don't replace it with something different | 15:55 |
| tumbleweed | once it's been published | 15:55 |
| gch-scilifelab | ok | 15:57 |
| gch-scilifelab | thank you very much :-) | 15:57 |
| gch-scilifelab | It's a good thing to know... :-) | 15:57 |
| tumbleweed | personally, I think that restriction is unecessarily harsh for PPAs, but it's good training for the archive | 15:58 |
| jtaylor | ups I uploaded something as mergomatic ._. | 17:44 |
| jtaylor | well at least I only broke a 5 month streak of that not happing | 17:45 |
| jtaylor | aren'T there debian like autorejects to prevent such things? | 17:46 |
| tumbleweed | launchpad tries hard to avoid ubuntu-specific policy | 17:52 |
| TheDrums | micahg: Sorry, I don't exactly know what I should be doing with that, never done it before and it ran into an error number I can't exactly remember, maybe 19? | 18:22 |
| arand | gcc-4.4 is the latest available in 10.04 Lucid? | 18:33 |
| Lasall | yes | 18:34 |
| TheLordOfTime | yup | 18:34 |
| === lifeless_ is now known as lifeless | ||
| verwilst | anyone here with the power to change a bugreport from fix released to confirmed? I messed up but can't correct it myself | 21:03 |
| tumbleweed | in general, #ubuntu-bugs is the place to ask for that. but I've done it | 21:07 |
| ESphynx | hey tumbleweed :) xnox uploaded Ecere to Debian Experimental =) \o/ | 21:09 |
| * tumbleweed saw :) | 21:10 | |
| ESphynx | hehe | 21:10 |
| * ESphynx has a Quetzal (the bird) picture on his desktop :P | 21:10 | |
| Laney | true Nice Guy | 21:10 |
| === jibel_ is now known as jibel | ||
| a7x | i actually own a Quetzal ESphynx | 23:26 |
| ESphynx | a7x you do? :) awesome :) | 23:26 |
| a7x | well, maybe you don't know that i'm not talking about the bird | 23:27 |
| ESphynx | oh you’re not? | 23:27 |
| ESphynx | what do you own then :P | 23:27 |
| a7x | http://en.m.18dao.net/images/0/04/P-99_Guatemala_1998_One_Quetzal.jpg | 23:27 |
| a7x | :) | 23:27 |
| ESphynx | lolz | 23:27 |
| ESphynx | didn’t know that! http://en.wikipedia.org/wiki/Guatemalan_quetzal | 23:27 |
| a7x | and about the bird, i think it's a protected specie | 23:28 |
| ESphynx | probably is! | 23:28 |
| a7x | looks like there is no way to buy the bird ESphynx | 23:33 |
| a7x | even if it's not really in danger | 23:33 |
| ESphynx | ah | 23:33 |
| ESphynx | you just gotta go in the South and catch one yourself | 23:34 |
| a7x | looks like it's illegal | 23:34 |
| a7x | but you can't really trust yahoo answers | 23:34 |
| ESphynx | hehe | 23:34 |
| ESphynx | well I’ll settle for Quantal Quetzal being able to compile and run eC code :P | 23:35 |
| === RAOF_ is now known as RAOF | ||
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